A reading list
- 2005, Genome Research, Evolutionarily conserved elements in vertebrate,insect, worm, and yeast genomes
- 2006, Genome Research, Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
- 2006, Plos Computational Biology, Identification and Classification of Conserved RNA Secondary Structures in the Human Genome
- 2007, NAR, Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
- 2008, Genome Research, Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
- 2009, Nature, Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis
- 2010, Plos Genetics, Genome-Wide Double-Stranded RNA Sequencing Reveals the Functional Significance of Base-Paired RNAs in Arabidopsis
- 2010, Genome Biology, Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
- 2011, Genome Research, New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
- 2011, Plos Computational Biology, From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs
- 2012, The Plant Cell, Regulatory Impact of RNA Secondary Structure across the Arabidopsis Transcriptome
- 2013, Genome Research, Structure-based whole-genome realignment reveals many novel noncoding RNAs
- 2017, Genome Research, The identification and functional annotation of RNA structures conserved in vertebrates
- 2017, NAR, Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions
- 2021, Genome Biology, Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes